| Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae. |
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Weihong Xu, Jennifer G Aparicio, Oscar M Aparicio, Simon Tavaré |
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BMC Genomics (2006), 7():276 |
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| These findings provide the most comprehensive, accurate, and detailed mapping of ORC binding sites to date, adding to the emerging picture of the chromatin organization of the budding yeast genome. |
OriDB annotation of this paper:
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Origin site(s) analysed by ARS assay:
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ARS102, ARS102.5, ARS103, ARS104, ARS105, ARS106, ARS107, ARS107.5, ARS108, ARS111, ARS112, ARS113, ARS200, ARS201, ARS202, ARS203, ARS206, ARS207, ARS207.1, ARS207.8, ARS208, ARS210.5, ARS211, ARS212, ARS213, ARS214, ARS215, ARS215.5, ARS216, ARS217, ARS218, ARS219, ARS219.5, ARS220, ARS221, ARS221.5, ARS222, ARS222.5, ARS223, ARS224, ARS225, ARS227, ARS228, ARS228.5, ARS229, ARS400, ARS402.5, ARS405.5, ARS413.5, ARS426.5, ARS427.5, ARS429.5, ARS430.5, ARS603.1, ARS608.5, ARS1007.5, ARS1009.5, ARS1016, ARS1017, ARS1017.5, ARS1018.5. |
Origin site(s) analysed by 2D gel analysis: |
None curated. |
Predicted ACS element: |
ARS107, ARS108, ARS109, ARS110, ARS111, ARS112, ARS109, ARS110, ARS111, ARS113, ARS201, ARS202, ARS206, ARS207, ARS208, ARS209, ARS211, ARS212, ARS at , ARS at , ARS216, ARS217, ARS218, ARS219, ARS at II-587, ARS220, ARS221, ARS221.5, ARS222, ARS219.5, ARS224, ARS at , ARS229, ARS228.5, ARS300, ARS at , ARS320, ARS301, ARS304, ARS305, ARS306, ARS307, ARS at , ARS309, ARS at , ARS310, ARS314, ARS313, ARS315, ARS319, ARS316, ARS at III-138, ARS at IV-9, ARS403, ARS400, ARS404, ARS402.5, ARS406, ARS409.5, ARS409, ARS412, ARS413, ARS405.5, ARS415, ARS413.5, ARS416, ARS417, ARS417.5, ARS418, ARS419, ARS420, ARS421, ARS422, ARS422.5, ARS423, ARS425, ARS at IV-444, ARS at IV-899, ARS102, ARS102.5, ARS104, ARS105, ARS106, ARS428, ARS429, ARS430, ARS429.5, ARS431, ARS431.5, ARS at , ARS432.5, ARS433, ARS435, ARS at , ARS at IV-1380, ARS440, ARS441, ARS442, ARS446, ARS447, ARS at IV-1524, ARS at , ARS at IV-1531, ARS at , ARS at V-12, ARS507, ARS508, ARS510, ARS511, ARS at V-68, ARS512, ARS at V-256, ARS513.5, ARS513.5, ARS514, ARS at V-302, ARS at V-317, ARS516, ARS518, ARS519, ARS520, ARS521, ARS522, ARS523, ARS at V-184, ARS600.1, ARS600.1, ARS600.2, ARS600.4, ARS602, ARS603, ARS at VII-33, ARS604, ARS605, ARS606, ARS607, ARS608, ARS609, ARS610, ARS at , ARS at , ARS at VII-17, ARS at VII-553, ARS702, ARS704, ARS at , ARS706, ARS at VII-187, ARS710, ARS at VII-241, ARS714, ARS716, ARS at , ARS at , ARS719, ARS721, ARS722, ARS at VII-654, ARS727, ARS728, ARS731.5, ARS733, ARS734, ARS at VII-1002, ARS at VII-1063, ARS at VIII-111, ARS131a, ARS131a, ARS at VII-1090, ARS at VIII-452, ARS131n, ARS802, ARS at VIII-46, ARS805, ARS810, ARS810, ARS813, ARS at VIII-381, ARS818, ARS820, ARS822, ARS823, ARS823.5, ARS at IX-190, ARS at , ARS824, ARS at IX-226, ARS at IX-407, ARS at IX-8, ARS at IX-17, ARS at IX-34, ARS at IX-81, ARS909, ARS at , ARS911.5, ARS912, ARS913, ARS1009.5, ARS913.5, ARS914, ARS916, ARS at , ARS920, ARS at , ARS922, ARS at IX-433, ARS1018.5, ARS1001, ARS1002, ARS1003, ARS1004, ARS1005, ARS1006, ARS1007, ARS1007.5, ARS at , ARS at , ARS at X-702, ARS at , ARS at , ARS1015, ARS at , ARS at XI-200, ARS at , ARS at XI-236, ARS at , ARS1021, ARS1023, ARS at , ARS at , ARS at XI-1, ARS1103, ARS1104.5, ARS1106.3, ARS1106.7, ARS at XII-7, ARS at XI-302, ARS1109, ARS1112, ARS1114, ARS1114.5, ARS at XI-463, ARS1116, ARS at XI-530, ARS1118, ARS1120, ARS at XI-633, ARS1123, ARS at XI-662, ARS at XI-662, ARS at XII-1, ARS at XII-607, ARS at XII-12, ARS at XII-52, ARS1206, ARS at XII-140, ARS1209, ARS at XII-645, ARS1211, ARS1211.5, ARS1212.5, ARS1213, ARS1215, ARS1216, ARS1216.5, ARS at XII-786, ARS1217, ARS1218, ARS at XII-839, ARS at XII-623, ARS1220, ARS1223, ARS at XIII-1, ARS1226, ARS1227.5, ARS at XII-928, ARS at , ARS at XII-1043, ARS1235, ARS at XII-1064, ARS at XII-1071, ARS at XIII-74, ARS at XIII-269, ARS at XIII-6, ARS1304, ARS at XIII-342, ARS1305, ARS1307, ARS1307.5, ARS at , ARS1310, ARS at XIV-1, ARS at XIV-253, ARS1312, ARS1316, ARS1320, ARS at XIV-705, ARS at , ARS1325, ARS1327, ARS at , ARS1330, ARS at XIII-837, ARS1331.5, ARS at XIII-879, ARS at , ARS at XIII-923, ARS at XV-24, ARS at XIV-9, ARS at XIV-9, ARS at XIV-15, ARS1405, ARS1406, ARS1407, ARS at XIV-127, ARS1411, ARS1412, ARS1413, ARS1414, ARS1415, ARS at XV-160, ARS1419, ARS at , ARS1421, ARS1422, ARS1424, ARS1426, ARS at , ARS at XIV-764, ARS at XIV-783, ARS at XV-1, ARS at XV-11, ARS at XV-19, ARS1506.5, ARS1507, ARS1508, ARS1509, ARS1509.5, ARS1510, ARS at XV-309, ARS at XV-445, ARS1513, ARS at XV-497, ARS at XV-459, ARS at XV-464, ARS1514, ARS at XV-521, ARS at XV-618, ARS at XV-1023, ARS at XV-682, ARS1521, ARS1523, ARS1524, ARS at XV-1058, ARS1528, ARS1529.5, ARS at XVI-242, ARS at XVI-274, ARS at XV-1081, ARS at XV-1081, ARS at XV-1091, ARS at XVI-377, ARS1601, ARS at XVI-19, ARS1604, ARS1605, ARS1607, ARS1614, ARS at XVI-569, ARS at XVI-332, ARS at XVI-701, ARS1618, ARS1619, ARS1620.5, ARS1621, ARS1622, ARS at XVI-584, ARS1624, ARS at , ARS at IX-308, ARS1626, ARS1626.5, ARS1627, ARS1628, ARS805.5, ARS1630, ARS1630, ARS at , ARS1631, ARS at XVI-942, ARS at XII-1056, ARS at , ARS at , ARS209, ARS at , ARS at , ARS216, ARS219, ARS220, ARS221, ARS227, ARS229, ARS303, ARS309, ARS310, ARS at , ARS at , ARS409, ARS413.5, ARS417.5, ARS419, ARS420, ARS421, ARS at , ARS422.5, ARS447, ARS508, ARS513.5, ARS514, ARS at V-302, ARS at , ARS520, ARS522, ARS600.1, ARS601, ARS603, ARS610, ARS at VII-17, ARS704, ARS718, ARS at , ARS at , ARS731.5, ARS734, ARS at VII-1063, ARS131a, ARS at , ARS823.5, ARS at , ARS911, ARS919, ARS920, ARS at , ARS1004, ARS1005, ARS1006, ARS1007, ARS at , ARS at , ARS1104.5, ARS1112, ARS at , ARS at XII-52, ARS1206, ARS1211.5, ARS at , ARS1216, ARS1216.5, ARS at XII-786, ARS at XII-928, ARS1233, ARS at XII-1043, ARS1235, ARS at XII-1071, ARS1304, ARS at , ARS at , ARS1323, ARS1329, ARS at , ARS at XV-160, ARS1421, ARS1422, ARS1426, ARS1427, ARS at , ARS at , ARS1509, ARS at , ARS at , ARS at , ARS at XV-1081, ARS at , ARS1622, ARS at , ARS at IX-308, ARS1628, ARS at , ARS at , ARS at , ARS310, ARS403, ARS at , ARS at V-302, ARS at , ARS719, ARS823.5, ARS at , ARS1006, ARS1023, ARS at , ARS at , ARS at XII-786, ARS at , ARS310, ARS1006. |
Experimentally confirmed ACS element: |
ARS1001, ARS1002, ARS1003, ARS1004, ARS1007, ARS1007.5, ARS1009, ARS1011, ARS1014, ARS1015, ARS1018, ARS1019, ARS1020, ARS1005. |
Activation ('firing') time determined: |
None curated. |
Activation ('firing') efficiency determined: |
None curated. |
Analysed by microarray: |
ARS102, ARS102.5, ARS103, ARS104, ARS105, ARS106, ARS107, ARS107.5, ARS108, ARS109, ARS110, ARS111, ARS112, ARS113, ARS200, ARS201, ARS201.5, ARS202, ARS203, ARS206, ARS207, ARS207.1, ARS207.5, ARS207.8, ARS208, ARS209, ARS at II-279, ARS210.5, ARS211, ARS212, ARS213, ARS214, ARS215, ARS215.5, ARS at II-479, ARS216, ARS217, ARS218, ARS219, ARS219.5, ARS220, ARS221, ARS221.5, ARS222, ARS222.5, ARS223, ARS224, ARS225, ARS227, ARS228, ARS228.5, ARS229, ARS at II-812, ARS300, ARS301, ARS302, ARS303, ARS320, ARS304, ARS305, ARS306, ARS307, ARS308, ARS309, ARS at III-138, ARS310, ARS313, ARS314, ARS315, ARS316, ARS318, ARS319, ARS400, ARS at IV-9, ARS403, ARS402.5, ARS404, ARS405, ARS405.5, ARS406, ARS at IV-138, ARS at IV-158, ARS409, ARS409.5, ARS410, ARS412, ARS413, ARS413.5, ARS414, ARS415, ARS at IV-444, ARS416, ARS at IV-477, ARS417, ARS417.5, ARS418, ARS419, ARS420, ARS421, ARS422, ARS at IV-721, ARS422.5, ARS423, ARS425, ARS426.5, ARS at IV-899, ARS427.5, ARS428, ARS429, ARS429.5, ARS430, ARS430.5, ARS431, ARS431.5, ARS432, ARS432.5, ARS433, ARS434, ARS435, ARS437, ARS at IV-1380, ARS440, ARS441, ARS442, ARS446, ARS447, ARS at IV-1524, ARS at IV-1531, ARS at V-1, ARS503, ARS at V-12, ARS at V-18, ARS507, ARS at V-68, ARS508, ARS at V-110, ARS510, ARS511, ARS at V-184, ARS512, ARS at V-256, ARS513.5, ARS514, ARS at V-302, ARS at V-317, ARS516, ARS517, ARS518, ARS519, ARS520, ARS521, ARS522, ARS523, ARS at V-576, ARS at VI-1, ARS600.1, ARS600.2, ARS600.3, ARS600.4, ARS601, ARS602, ARS at VI-53, ARS603, ARS603.1, ARS603.5, ARS604, ARS605, ARS606, ARS607, ARS608, ARS608.5, ARS609, ARS610, ARS at VII-0, ARS at VII-8, ARS at VII-17, ARS at VII-33, ARS702, ARS704, ARS706, ARS707, ARS at VII-171, ARS at VII-187, ARS710, ARS at VII-241, ARS at VII-275, ARS714, ARS716, ARS717, ARS718, ARS at VII-481, ARS719, ARS720, ARS at VII-553, ARS721, ARS722, ARS at VII-608, ARS at VII-621, ARS at VII-654, ARS727, ARS728, ARS729, ARS731, ARS at VII-847, ARS at VII-883, ARS731.5, ARS at VII-917, ARS733, ARS734, ARS at VII-1002, ARS at VII-1005, ARS at VII-1063, ARS at VII-1074, ARS131a, ARS at VII-1090, ARS at VIII-1, ARS131n, ARS802, ARS at VIII-46, ARS at VIII-58, ARS805, ARS at VIII-88, ARS at VIII-111, ARS at VIII-116, ARS at VIII-135, ARS809, ARS810, ARS813, ARS815, ARS at VIII-360, ARS at VIII-381, ARS818, ARS820, ARS at VIII-452, ARS at VIII-475, ARS822, ARS at VIII-505, ARS823, ARS823.5, ARS at VIII-551, ARS824, ARS at VIII-562, ARS at IX-1, ARS at IX-8, ARS at IX-17, ARS at IX-31, ARS at IX-34, ARS907, ARS at IX-81, ARS909, ARS911, ARS911.5, ARS912, ARS at IX-190, ARS913, ARS at IX-226, ARS913.5, ARS914, ARS916, ARS at IX-323, ARS919, ARS920, ARS at IX-407, ARS922, ARS at IX-433, ARS at IX-439, ARS1001, ARS1002, ARS1003, ARS1004, ARS1005, ARS1006, ARS1007, ARS at X-121, ARS1007.5, ARS1008, ARS1009, ARS1009.5, ARS1010, ARS1011, ARS at X-355, ARS1012, ARS1013, ARS1014, ARS1015, ARS1016, ARS1017, ARS1017.5, ARS1018, ARS1018.5, ARS1019, ARS at X-644, ARS1020, ARS1021, ARS at X-702, ARS1022, ARS1023, ARS1024, ARS1025, ARS at XI-1, ARS at XI-8, ARS1103, ARS1104.5, ARS at XI-114, ARS1106, ARS at XI-164, ARS1106.3, ARS at XI-200, ARS1106.7, ARS at XI-236, ARS at XI-257, ARS at XI-302, ARS at XI-327, ARS1109, ARS at XI-344, ARS1112, ARS1113, ARS1114, ARS1114.5, ARS at XI-463, ARS1116, ARS at XI-520, ARS at XI-530, ARS1118, ARS1120, ARS at XI-633, ARS1123, ARS at XI-662, ARS at XII-1, ARS at XII-7, ARS at XII-12, ARS at XII-31, ARS at XII-52, ARS at XII-77, ARS1206, ARS at XII-140, ARS1209, ARS at XII-199, ARS1210, ARS1211, ARS1211.5, ARS1212, ARS1212.5, ARS1213, ARS1215, ARS1216, ARS1216.5, ARS at XII-468, ARS at XII-494, ARS1217, ARS1218, ARS at XII-607, ARS at XII-623, ARS at XII-638, ARS at XII-645, ARS1220, ARS at XII-731, ARS1223, ARS at XII-786, ARS1226, ARS at XII-806, ARS at XII-822, ARS at XII-839, ARS1227.5, ARS at XII-928, ARS at XII-948, ARS1233, ARS1234, ARS at XII-1043, ARS1235, ARS at XII-1064, ARS at XII-1071, ARS at XII-1078, ARS at XIII-1, ARS at XIII-6, ARS at XIII-25, ARS1303, ARS1304, ARS at XIII-45, ARS at XIII-74, ARS1305, ARS1307, ARS1307.5, ARS at XIII-227, ARS1309, ARS at XIII-269, ARS1310, ARS at XIII-340, ARS at XIII-342, ARS1312, ARS at XIII-417, ARS at XIII-433, ARS1316, ARS at XIII-482, ARS1319, ARS1320, ARS1322, ARS at XIII-569, ARS1323, ARS1324, ARS1325, ARS at XIII-689, ARS1327, ARS1328, ARS1329, ARS1330, ARS at XIII-837, ARS1331.5, ARS at XIII-879, ARS1332, ARS at XIII-919, ARS at XIII-923, ARS at XIV-1, ARS at XIV-9, ARS at XIV-15, ARS1405, ARS1406, ARS1407, ARS at XIV-127, ARS1411, ARS1412, ARS1413, ARS at XIV-253, ARS1414, ARS1415, ARS at XIV-344, ARS1417, ARS1419, ARS1420, ARS1421, ARS1422, ARS1424, ARS1426, ARS1427, ARS at XIV-705, ARS at XIV-714, ARS at XIV-739, ARS at XIV-764, ARS at XIV-783, ARS at XV-1, ARS at XV-11, ARS at XV-19, ARS at XV-24, ARS1506.5, ARS1507, ARS1508, ARS at XV-104, ARS1509, ARS1509.5, ARS at XV-160, ARS1510, ARS1511, ARS at XV-309, ARS at XV-332, ARS1513, ARS at XV-348, ARS at XV-354, ARS at XV-372, ARS at XV-398, ARS at XV-445, ARS at XV-459, ARS at XV-464, ARS1514, ARS at XV-497, ARS at XV-521, ARS1516, ARS at XV-577, ARS1517, ARS at XV-618, ARS1519, ARS at XV-663, ARS at XV-682, ARS1521, ARS1523, ARS1524, ARS at XV-855, ARS1526, ARS at XV-900, ARS at XV-902, ARS1528, ARS1529, ARS at XV-999, ARS at XV-1020, ARS at XV-1023, ARS1529.5, ARS at XV-1058, ARS at XV-1072, ARS at XV-1081, ARS at XV-1091, ARS at XVI-1, ARS1601, ARS1602, ARS at XVI-19, ARS1604, ARS1605, ARS at XVI-91, ARS1607, ARS at XVI-163, ARS at XVI-179, ARS at XVI-191, ARS at XVI-196, ARS1609, ARS at XVI-242, ARS at XVI-262, ARS at XVI-274, ARS1614, ARS at XVI-299, ARS at XVI-304, ARS at XVI-318, ARS at XVI-332, ARS at XVI-369, ARS at XVI-377, ARS1618, ARS1619, ARS at XVI-428, ARS at XVI-440, ARS at XVI-454, ARS1620.5, ARS at XVI-500, ARS1621, ARS at XVI-553, ARS1622, ARS1622.5, ARS at XVI-569, ARS at XVI-584, ARS at XVI-589, ARS1623, ARS1624, ARS1625, ARS at XVI-701, ARS at XVI-729, ARS1626, ARS1626.5, ARS1627, ARS at XVI-824, ARS1628, ARS at XVI-864, ARS1630, ARS1631, ARS at XVI-942, ARS at XVI-947. |
Other analysis: |
None curated. |
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