The files linked to below contain genome annotation data in BED and wiggle format. The coordinates used correspond to those used by the Yeast Genome Database in Oct 2003 and as used in the current S. cerevisiae release of the UCSC Genome Browser.
OriDB Confirmed ARS set (based on current database):
proARS from Wyrick et al. (2001):
nimARS from Xu et al. (2006):
Replication timing data:
Note: in the UCSC genome browser curves (wiggle tracks) display with time running UP the y-axis (in contrast to OriDB and most chromosome replication publication which show time down the y-axis) this results in peaks corresponding to late replicating region and valleys correspond to early replicating regions (origins).
From Raghuraman et al. (2001):
From Yabuki et al. (2002):
Chromatin immunoprecipitation (ChIP) of replication factors:
ORC ChIP from Xu et al. (2006):
Mcm2 ChIP from Xu et al. (2006):
S. cerevisiae OriDB - v1.3.0.
Designed and maintained by Dr Conrad A. Nieduszynski & Dr Anne D. Donaldson